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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THYM cis rs7072122 1 rs998449 chr10:45056696 ZNF22 chr10:45496273-45500776:+ 0.57 5.19 1.21E-6 Estradiol plasma levels (breast cancer)
THYM cis rs10935120 1 rs9985356 chr3:134232920 ANAPC13 chr3:134196547-134204865:- -0.52 -6.96 4.36E-10 Height
THYM cis rs10935120 1 rs9985356 chr3:134232920 CEP63 chr3:134204575-134293852:+ -0.39 -5.72 1.23E-7 Height
THYM cis rs10935120 1 rs9989967 chr3:134238964 ANAPC13 chr3:134196547-134204865:- 0.56 7.61 1.94E-11 Height
THYM cis rs10935120 1 rs9989967 chr3:134238964 CEP63 chr3:134204575-134293852:+ 0.41 6 3.54E-8 Height
THYM cis rs10935120 1 rs9990351 chr3:134239191 ANAPC13 chr3:134196547-134204865:- -0.56 -7.61 1.94E-11 Height
THYM cis rs10935120 1 rs9990351 chr3:134239191 CEP63 chr3:134204575-134293852:+ -0.41 -6 3.54E-8 Height
THYM cis rs2273 1 rs9995007 chr4:76897791 NAAA chr4:76831809-76862166:- -0.46 -4.92 3.56E-6 Longevity
THYM trans rs10037055 1 rs10037055 chr5:176691279 LOC388955 chr2:63849182-63850159:- -0.58 -8.52 2.33E-13 Migraine without aura
THYM trans rs10037055 1 rs6886255 chr5:176718361 LOC388955 chr2:63849182-63850159:- 0.58 8.51 2.53E-13 Migraine without aura
UCEC cis rs10461617 1 rs10051747 chr5:56083289 C5orf35 chr5:56205103-56213010:+ 0.58 6.18 5.74E-9 Type 2 diabetes
UCEC cis rs4660306 1 rs10157597 chr1:45990278 CCDC163P chr1:45960581-45965646:- -0.57 -7.25 1.94E-11 Homocysteine levels
UCEC cis rs9815354 1 rs1016669 chr3:41894440 ULK4 chr3:41288091-42003660:- 0.52 6.25 3.94E-9 Diastolic blood pressure
UCEC cis rs9309473 1 rs10169714 chr2:73808773 ALMS1P chr2:73872046-73912692:+ 0.47 5.52 1.42E-7 Metabolite levels
UCEC cis rs9309473 1 rs10175180 chr2:73673123 ALMS1P chr2:73872046-73912692:+ 0.54 6.52 9.93E-10 Metabolite levels